PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09640.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 446aa    MW: 49276 Da    PI: 5.4193
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09640.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.73.7e-130744311374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv++L++cA+ v+ gdl+ a +l++ ++ l +       + ++a yf  AL++r+++     ++a+p+s+       e+   ++ ++e++P+lkf
  Vang06g09640.3  74 LVHTLITCADSVQRGDLAFAGSLIESMQALLAHVNtsCGIGKVAGYFIDALRRRISS---PQSAAFPTSPY------ENEVLYHHYYEACPYLKF 159
                     689**************************944444136899***************9...22333444444......45556788********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf+++qGlQWpaL+qaLa Rp+gppslR+Tgvg+p+++++++l+e+g rLa++A++++v+f f+ ++a rled
  Vang06g09640.3 160 AHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPSLRLTGVGPPSPDERDTLREIGARLAELAHSVNVRFTFRGVAAWRLED 254
                     ***************************************************************************************9888**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+p+Ea+aVn+++qlhr+l       s +d+vL  ++sl+Pk+v+vveqea+hn+e Flerf+eal+yys++fdslea      e ++
  Vang06g09640.3 255 VKPWMLQVSPKEAVAVNSIMQLHRVL------GSGIDTVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEAC---SVEPDK 340
                     *************************9......556789*********************************************998...357788 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +++l+rei+nvv+ceg +r erhe l+kWrerl++aGF+p++l+++a+kqa++ll  ++ +gy vee++g+l+lgW++rpL+++SaW+
  Vang06g09640.3 341 GLAEMYLQREICNVVCCEGPARLERHEPLAKWRERLGRAGFRPLHLGSNAYKQASMLLTLFSAEGYCVEENQGCLTLGWHSRPLIAASAWQ 431
                     889999************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.9E-10148IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098563.44348411IPR005202Transcription factor GRAS
PfamPF035141.3E-12774431IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MERLENAINT VNSSRDISQV VSDALLYDPS NIGLGSWVDT LLSELDQTVS LPYDLSSDLP  60
GMVTTVEEDS GIRLVHTLIT CADSVQRGDL AFAGSLIESM QALLAHVNTS CGIGKVAGYF  120
IDALRRRISS PQSAAFPTSP YENEVLYHHY YEACPYLKFA HFTANQAILE AFNGHDCVHV  180
IDFNLMQGLQ WPALIQALAL RPGGPPSLRL TGVGPPSPDE RDTLREIGAR LAELAHSVNV  240
RFTFRGVAAW RLEDVKPWML QVSPKEAVAV NSIMQLHRVL GSGIDTVLGW IRSLNPKIVT  300
VVEQEANHNG EGFLERFTEA LHYYSTVFDS LEACSVEPDK GLAEMYLQRE ICNVVCCEGP  360
ARLERHEPLA KWRERLGRAG FRPLHLGSNA YKQASMLLTL FSAEGYCVEE NQGCLTLGWH  420
SRPLIAASAW QAAPLREGET VRFQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-676743012378Protein SCARECROW
5b3h_A5e-676743011377Protein SCARECROW
5b3h_D5e-676743011377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09640.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433963.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ8S4W71e-148GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0S3SPA00.0A0A0S3SPA0_PHAAN; Uncharacterized protein
STRINGXP_007144131.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-148GRAS family protein