PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g10470.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 473aa    MW: 53877 Da    PI: 6.1666
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g10470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.23.8e-26198295297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     + qrlw+++De  lL+G +d+ +++g      ++d+  +y+ v+ +++++++k+qlveK+rrLK+K k   +k  ++ke+ f+++++q ife+s+
  Vang06g10470.1 198 QYQRLWTKQDEKELLKGYLDYIKQHGRtttTLQNDVASLYDHVRPKLNVDFNKNQLVEKLRRLKRKHKLALNK-GTDKEVPFRNPQEQAIFEISN 291
                     579******************9998875545556***************************************.9999***************** PP

          DUF573  94 kiWg 97 
                     kiWg
  Vang06g10470.1 292 KIWG 295
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.8864579IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.01980114IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-582115IPR002885Pentatricopeptide repeat
PfamPF045042.9E-25200295IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MRFRASDLYL RSSSREEKWS ESSFLPEEGA AGHERGLALE LVEARLKPYN EMFDLAGKLR  60
HFDLTWHVIN LMKTHDIEIS AHTFAVLVRR YVRVGLPAEA VHAFNGMEDY GCSPDKFKLV  120
WFMGGVVLVT YLRLKSSCDV DEIIPVALAV PSATPAVTVA FPADDVRSTV PGTTATATTF  180
VTRSKGQCSN KYSGIVRQYQ RLWTKQDEKE LLKGYLDYIK QHGRTTTTLQ NDVASLYDHV  240
RPKLNVDFNK NQLVEKLRRL KRKHKLALNK GTDKEVPFRN PQEQAIFEIS NKIWGNDTDI  300
LLDQESLDGD ASGRTPESRY LGGNVKVKVD QLDNSDEIDE RVPKRLRLDD AEDVNRTNEH  360
NNSGSLQVFI EETMRSCFSP LLKEMLDEVN QEPPPGLVPI PLPLFPEEVD HEQWRKRGIL  420
ELEVYLKRLE LLQDQIKARL EELRSRREVY DKTSPGCADT ACALSNTNNF NE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g10470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438113.10.0PREDICTED: uncharacterized protein LOC108344158
TrEMBLA0A0L9VJJ10.0A0A0L9VJJ1_PHAAN; Uncharacterized protein
STRINGXP_007144807.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.15e-31DNA-binding storekeeper protein-related transcriptional regulator