PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g10530.2
Common NameLR48_Vigan10g095800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 284aa    MW: 31522.6 Da    PI: 9.3988
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g10530.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.62.8e-3646139295
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     lfqrlw++eDei lLqG++d++a++g+s ++d+  fy+++k+++++ ++k+qlveK+rrLKkK+++  +k+++gke+sf+++hd+ +fe+s++i
  Vang06g10530.2  46 LFQRLWTDEDEIGLLQGFLDYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLTKINDGKEFSFKSPHDRATFEISRRI 139
                     79******************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-3247139IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
LAAPASAVSQ TLGTASTAIV VADSSPKRPR TEQVEEKKAL DDSRRLFQRL WTDEDEIGLL  60
QGFLDYTAQR GSSHHNDTAL FYDQIKSKLQ LGFNKNQLVE KLRRLKKKYR NVLTKINDGK  120
EFSFKSPHDR ATFEISRRIK REFHDGSALN KDSNCIGNSN NNSNKDNENC NHRHSLQGLI  180
EETVRSCVSP VLKELVSGGM GFGSGFGFGG RGFGVGGGFP LNSLQMQMPM ALSSLNLGIG  240
EMVMDEKWRK QQILELEVYS KRLELVQNEI KVALEELRSS GGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531PKRPRTE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g10530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438647.11e-163PREDICTED: mediator-associated protein 1-like
SwissprotF4K5T41e-69STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A0L9VJ441e-162A0A0L9VJ44_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SQ741e-162A0A0S3SQ74_PHAAN; Uncharacterized protein
STRINGXP_007144806.11e-146(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-54DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]