PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g10700.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 254aa    MW: 27099.6 Da    PI: 4.9915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g10700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09102146554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Vang06g10700.1 102 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 146
                     99***********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-1195151No hitNo description
SuperFamilySSF474592.36E-1595156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12697146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1599157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7102146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-11103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAGNSSSEGL GDDFFEQILA VPEAPVGYGR TVATDVGMLQ LGSTTPTAAA LRGSRFDACE  60
RFVFSAFQGQ GGGGPASMSG TQQAPGIRPR VRARRGQATD PHSIAERLRR ERIAERMKAL  120
QELVPSINKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAQLVAD VPLSAVEQGE  180
DIEGGSNEQA WDKWSNDGTE QQVAKLMEED VGAAMQFLQS KALCIMPISL ASAIFRMPQS  240
ESSTVIKPES NSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g10700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237097.11e-144transcription factor UNE12 isoform X6
SwissprotO227688e-80UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A151U5C01e-132A0A151U5C0_CAJCA; Transcription factor UNE12
STRINGXP_007144828.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]