PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g10740.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 244aa    MW: 27452.3 Da    PI: 5.1791
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g10740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY80.26.2e-2512221566158
           YABBY  66 slkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaak 158
                     +l  e+   ++v +en  +++ +++ +s+s s  + s+ e+e++  + + v++P e rq  Psayn+fikeei+r+ka+ Pd++h+eafs+aak
  Vang06g10740.1 122 ALLSEVGYVKEVPRENSPEQDANKTLNSHSASLITYSDCEEEDLIPMNNiVNKPQEMRQLTPSAYNCFIKEEINRLKAESPDMAHKEAFSTAAK 215
                     444444444445555555555555555555555555666666655455549******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036399.6E-402132IPR005200Endo-1,3(4)-beta-glucanase
PfamPF046904.0E-22135215IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0052861Molecular Functionglucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRLRCFDLYK LHSWAGGLTE FADGRNQEST SEAVNAYYSA ALMGLAYGDT QLIATGSTLA  60
ALEIHSAQML WHLGEGHKLY EEDYTKENKV VSVVWANEIV DYSVERVQAC IHVLPLSPIT  120
EALLSEVGYV KEVPRENSPE QDANKTLNSH SASLITYSDC EEEDLIPMNN IVNKPQEMRQ  180
LTPSAYNCFI KEEINRLKAE SPDMAHKEAF STAAKIAKEM IKRAARQINL WILTPKWTLL  240
MLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g10740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509769.14e-68probable endo-1,3(4)-beta-glucanase ARB_01444
TrEMBLA0A0S3SQ513e-92A0A0S3SQ51_PHAAN; Uncharacterized protein
STRINGXP_007151472.13e-67(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-21YABBY family protein