PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g11710.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 226aa    MW: 25209.2 Da    PI: 8.4727
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g11710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.72.9e-3956116262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ke+ l+cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss
  Vang06g11710.1  56 KEQPLNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSS 116
                     78999*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2853114IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3358114IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.80760114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNDSNSTFPW TDPTMSELGR DDVFSEMVVK PMEDIAATNT CPKVAGAVER KPRPQKEQPL  60
NCPRCHSINT KFCYYNNYSL TQPRYFCKTC RRYWTEGGSL RNIPVGGGSR KNKRSSTFSS  120
TPHNNSPDNI KLPDLVIAPH SQNPKNNIHQ ADPNPSYACG FPLQDFKPTL NFSLDHGYAS  180
LHNIQSGRLL FPFEDLKQVS TTTTMDQKQQ GDSTGYWTGM FGGGS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g11710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410524.13e-88PREDICTED: dof zinc finger protein DOF4.6-like isoform X2
RefseqXP_017410525.13e-88PREDICTED: dof zinc finger protein DOF4.6-like isoform X3
SwissprotQ433858e-45DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A0S3SPW79e-87A0A0S3SPW7_PHAAN; Uncharacterized protein
STRINGGorai.003G076400.16e-77(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.13e-47Dof family protein