PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g13570.1

Common Name

LR48_Vigan02g132800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 189aa MW: 19977.5 Da PI: 8.2775

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g13570.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.6	5.5e-35	41	120	3	82
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 + +++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++++a ++++ s+ + Vang06g13570.1 41 VVTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTIPAAPISSVTPSVPS 120 56789**********************************************************99999444222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-30	45	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.04	46	100	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MTSQVVLHNF PHSETKPSTT TTTDSPPTAP SLAITKRSSA VVTRSTKDRH TKVNGRGRRV 60 RMPPLCAARI FQLTRELGHR SDGETIEWLL RHAEPSIIAA TGSGTIPAAP ISSVTPSVPS 120 SESSVSVPVV GGQGMFSVAP PSCRLDLSPP PGLDFAATNG YRHMPFTALL LQPSTGEENQ 180 NDESLGEQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g13570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414009.1	1e-134	PREDICTED: transcription factor TCP11-like
Swissprot	Q9SJK7	4e-42	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A0L9TX63	1e-133	A0A0L9TX63_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SR38	1e-133	A0A0S3SR38_PHAAN; Uncharacterized protein
STRING	XP_007144360.1	8e-99	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	8e-42	TCP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]