PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g13830.4
Common NameLR48_Vigan02g137200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 160aa    MW: 17753.5 Da    PI: 6.8081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g13830.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-191667256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+G+r+++ +g+++AeIrdp+     +r++lg+f tae+Aa+a++aa+  ++g+
  Vang06g13830.4 16 RYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFETAEQAARAYDAAAFHFRGH 67
                    69*******.**********8542..4***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.81E-201575No hitNo description
SuperFamilySSF541713.07E-231675IPR016177DNA-binding domain
PROSITE profilePS5103225.4351674IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-321676IPR001471AP2/ERF domain
SMARTSM003801.7E-361680IPR001471AP2/ERF domain
PfamPF008475.3E-131667IPR001471AP2/ERF domain
PRINTSPR003671.3E-111728IPR001471AP2/ERF domain
PRINTSPR003671.3E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEGGRSSVSN GNVEARYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFETA EQAARAYDAA  60
AFHFRGHRAI LNFPNEYQSS NPNSSLPMPL TTLPPPSSSS SSSSSSYSSS YSSYSIDNLA  120
GPVFSGESMQ GDDTFELEYL DNKLLEELLQ MQDNRHLFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-28277375Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g13830.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414328.11e-114PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9TXU61e-113A0A0L9TXU6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SR931e-113A0A0S3SR93_PHAAN; Uncharacterized protein
STRINGGLYMA13G18400.11e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-27ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]