PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g14290.3

Common Name

LR48_Vigan02g141900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 151aa MW: 17004 Da PI: 10.7341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g14290.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ Fs+ L H +H Vang06g14290.3 25 FECRTCNRKFSSFQALGGHRASH 47 89**********99999998887 PP
2	zf-C2H2	16.5	2.4e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk Fs L H+++H Vang06g14290.3 70 HECSICGKKFSLGQALGGHMKRH 92 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.66E-9	25	92	No hit	No description
PROSITE profile	PS50157	10.492	25	52	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.1E-4	25	43	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.33	25	47	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.6E-10	25	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-5	62	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.097	70	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.03	70	92	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.8E-10	70	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0071289	Biological Process	cellular response to nickel ion
GO:2000280	Biological Process	regulation of root development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
LANCLVLLSR PIEIKPHKLF RPQEFECRTC NRKFSSFQAL GGHRASHKTP KQDVKEEEKI 60 LRLGNKTKKH ECSICGKKFS LGQALGGHMK RHRIALNEGF SSINQALVKV PILKRSNTTR 120 VMCLDLNLTP LQNDLKLLFG DKAPRVDSFV *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g14290.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414343.1	1e-107	PREDICTED: zinc finger protein ZAT11
Swissprot	Q9SLD4	4e-40	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A0L9TYK5	1e-105	A0A0L9TYK5_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SRD2	1e-105	A0A0S3SRD2_PHAAN; Uncharacterized protein
STRING	XP_007144472.1	1e-88	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	1e-42	C2H2 family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]