PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g14300.3

Common Name

LR48_Vigan02g142000

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 139aa MW: 15318.6 Da PI: 10.0559

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g14300.3	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00046	16	38	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Vang06g14300.3 16 FQCKTCNRKFSSFQALGGHRASH 38 89**********99999998887 PP
2	zf-C2H2	14.3	0.00012	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Vang06g14300.3 58 HECSICGQGFSLGQALGGHMRKH 80 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.9E-4	13	34	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.263	16	43	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.68E-9	16	80	No hit	No description
SMART	SM00355	0.099	16	38	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	9.7E-11	16	40	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	18	38	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.6E-5	56	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.0E-9	57	82	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.575	58	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MVAVLKRQRE NESEEFQCKT CNRKFSSFQA LGGHRASHKK PKLEGEEGKD LSRKPKTHEC 60 SICGQGFSLG QALGGHMRKH RGGMNEGFSS VIAEAPLLKR SNSSKRVMCL ELDLNLTPLE 120 NDLKLLFGNK APTVHLSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	53	KKPKLEGEEGKDLSRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g14300.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414050.1	4e-97	PREDICTED: zinc finger protein ZAT11-like
Swissprot	Q9SLD4	1e-41	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A0L9TXJ7	1e-95	A0A0L9TXJ7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SRD8	1e-95	A0A0S3SRD8_PHAAN; Uncharacterized protein
STRING	XP_007144473.1	9e-79	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	5e-44	C2H2 family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]