PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g15810.1
Common NameLR48_Vigan02g149800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 279aa    MW: 31573.1 Da    PI: 5.9038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g15810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-192875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W++ ar  g++Rt+k+c++rw++yl
   Vang06g15810.1 28 KGSWTEEEDSLLINYVNLHGEGHWNSLARSAGLKRTGKSCRLRWLNYL 75
                     799*******************************************97 PP
2Myb_DNA-binding46.77.3e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   Vang06g15810.1  81 RGNITLQEQLLILELHSRWGNR-WAKIAEQLP-GRTDNEIKNYWRT 124
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.2952379IPR017930Myb domain
SuperFamilySSF466892.81E-3026122IPR009057Homeodomain-like
SMARTSM007171.5E-162777IPR001005SANT/Myb domain
PfamPF002491.0E-172875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-222982IPR009057Homeodomain-like
CDDcd001671.59E-123075No hitNo description
PROSITE profilePS5129418.0380130IPR017930Myb domain
SMARTSM007173.1E-1380128IPR001005SANT/Myb domain
PfamPF002496.9E-1481124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2183128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
LYIGAMTSLS DSQLSATYGS EEEFAIKKGS WTEEEDSLLI NYVNLHGEGH WNSLARSAGL  60
KRTGKSCRLR WLNYLRPNVR RGNITLQEQL LILELHSRWG NRWAKIAEQL PGRTDNEIKN  120
YWRTRVLKQA KQLKCDVNSK QFRDAVRFVW MPRLMERIQA SSGNVYSSYG HGQTTLCNTQ  180
THGESSGVNP MMFSESSMIS SYSSGVDVQP PSLSDASTTS SCNLMGDGSC SSESVEKGWQ  240
QWDYSDLQAF EPNHGFGDAD LWTDENMWFL QQHLADDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-2441223120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g15810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413106.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ10MB43e-78MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0L9TXN40.0A0A0L9TXN4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SQZ30.0A0A0S3SQZ3_PHAAN; Uncharacterized protein
STRINGXP_007145122.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-70myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]