PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g15980.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 1414aa MW: 159363 Da PI: 6.8106

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g15980.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	218.6	3.3e-67	182	517	2	339
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPil 91 + Ll++++ v +++e+a+ lL++l ++s g +p+qR++++f +AL +r+ r++ + + ++++++e++++e+l ++ +e P+ Vang06g15980.1 182 AQFLLAAVDRVGCQQFERASMLLSHLLWNSSGGGgSPVQRVVFHFSQALLERIKRETRGKVTLNKCEKNKEREMIEKLRLDTNmavtCHEKIPFN 276 5789999********************9999889***************9998888889999998888888877655556699999* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 ++ +++ qaI+e v+ ++r+H i +di+ G+Q aL+qaL +R ++ l+iT++g + k++leetg+rL +fAe+l++pf ++++ +++ Vang06g15980.1 277 QVMQFAGVQAIVEHVAFQTRIHLINLDIGCGVQCTALMQALVERHeRQVELLKITAIGL---QGKTRLEETGKRLVSFAESLNLPFLYKIVFVRS 368 *******************************************555669****...58*************************** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++++ e++ ++ +Ea+aV + ++l +++++ vsle+ +++++ +++P++++v e ea+hns+sF++rf+ea+ +y+a fd++ + + ++ e Vang06g15980.1 369 ITEIKAEQFGIEDDEAVAVYCPYMLRTMVSDFVSLEH----LMRVMTKIRPTIMIVLELEAKHNSPSFVNRFIEAFFFYAAYFDCIYTCMKQDYE 459 *************************99999999....************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 r+ +E l++ i+n+va+e er+ r + Wr+ + + + + ++s++ qa+l Vang06g15980.1 460 CRMRIEGI-LSEGIRNIVAMEDGERKVRDVKIDVWRRFFARYRMVETTFSDSSLYQANL 517 **99.**********************************99999999999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.446	155	532	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-64	182	517	IPR005202	Transcription factor GRAS
PROSITE profile	PS51576	236.095	397	1413	IPR025778	Histone-lysine N-methyltransferase, EZ
Gene3D	G3DSA:2.170.270.10	2.4E-44	1094	1149	No hit	No description
Gene3D	G3DSA:2.170.270.10	2.4E-44	1228	1404	No hit	No description
SuperFamily	SSF82199	5.49E-41	1252	1382	No hit	No description
PROSITE profile	PS50280	13.006	1264	1379	IPR001214	SET domain
SMART	SM00317	1.6E-32	1264	1385	IPR001214	SET domain
Pfam	PF00856	4.4E-9	1275	1378	IPR001214	SET domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006349	Biological Process	regulation of gene expression by genetic imprinting
GO:0009960	Biological Process	endosperm development
GO:0005677	Cellular Component	chromatin silencing complex
GO:0009506	Cellular Component	plasmodesma
GO:0031519	Cellular Component	PcG protein complex
GO:0003727	Molecular Function	single-stranded RNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1414 aa Download sequence Send to blast
MGSGPFSFTP FKFNEFLGGY GSIQGEDVVL QREHTFSSTT EQLTGIDTHV DQTQKQQRSF 60 DFDHVMTEEF NLESVQPPKK SSFQETKGQK DKQVLPSSLA SLQLLRNYGS RFNKLGTQNI 120 RCSVETCFSP QKLSTEEIIR LAGARYLQHS TQWHHDICIP VHPYGMSLQV LSEEENRGVE 180 LAQFLLAAVD RVGCQQFERA SMLLSHLLWN SSGGGGSPVQ RVVFHFSQAL LERIKRETRG 240 KVTLNKCEKN KEREMIEKLR LDTNMAVTCH EKIPFNQVMQ FAGVQAIVEH VAFQTRIHLI 300 NLDIGCGVQC TALMQALVER HERQVELLKI TAIGLQGKTR LEETGKRLVS FAESLNLPFL 360 YKIVFVRSIT EIKAEQFGIE DDEAVAVYCP YMLRTMVSDF VSLEHLMRVM TKIRPTIMIV 420 LELEAKHNSP SFVNRFIEAF FFYAAYFDCI YTCMKQDYEC RMRIEGILSE GIRNIVAMED 480 GERKVRDVKI DVWRRFFARY RMVETTFSDS SLYQANLKQL GEAANDALGT LSLKINQLKK 540 QIQVERIVYI KEKIQSNEKK LQCHTSGVLS TISTRGYSQT EENRKIPILS RIDRPLCKFN 600 GFSPVSGDKD HNNQDVLSAT SIKIPYIERL PPYTSWIFLD RNQRMAEDQS VVGRRRIYYD 660 QHGSEALICS DSEEELTEHE EEKHEFSEAE DRVLWMAFEE YGLNEEVLNI VSEFVGGKSS 720 EIQERYKSIK EKNIGRLDQP SENSGDLESI IGISPEKTLS AALDSFDNLF CRRCLQIFDC 780 RLHGCSQPLV YPSEKQTVWS DPEGDKKPCS DQCYLKQLNE VKGVSEDATS GSDQNKRTTT 840 MEEADGILAP STIEEPGNQS TSPFPTEVDC HRSLNLNVPI SVSVEKRKVT NVSDTALCDS 900 TPLPDGSQNS NKKLKTISDD VITVNSDSSN NLLGACDESK HTITCAILDK SVNNNSNKLI 960 DSSSTCDTDE HDKSIGDGPK DPTNKTELKK LSPSMEGKVD GMPGLSDWKP LEKELYLKGV 1020 EMFGRNSCLI ARNLLSGLKT CMEIATYMHA GGVSMPHGSI IAPSSIMDDK GKFDAEYTDQ 1080 EMPSRSRLLR KRGKTRKFKY SWKSTGHPSI WKRIADGKNQ SCKQYTPCGC QSMCGKEFVQ 1140 KAAKIDSEDA IVPRVSAEVD NVRVLLQDGN VTQMFVGIAG ATSYKFLETI VFFGTHKVGL 1200 VSCLTIELSK HQGQRRSPSP YIPSPVVVPP SEFVRCCGDG SLGEPPRRGE GQCGNMRLLL 1260 RQQQRILLAK SDVAGWGAFL KNPVNKNDYL GEYTGELISH READKRGKIY DRANSSFLFD 1320 LNDQYVLDAY RKGDKLKFAN HSSNPNCYAK VMLVAGDHRV GIFSKEHIDA SEELFYDYRY 1380 GPDQAPPWAR KPEGSKSDES TVCQGRAKKH QSH*

Sequence ? help Back to Top

Protein Sequence Length: 1414 aa Download sequence Send to blast

MGSGPFSFTP FKFNEFLGGY GSIQGEDVVL QREHTFSSTT EQLTGIDTHV DQTQKQQRSF  60
DFDHVMTEEF NLESVQPPKK SSFQETKGQK DKQVLPSSLA SLQLLRNYGS RFNKLGTQNI  120
RCSVETCFSP QKLSTEEIIR LAGARYLQHS TQWHHDICIP VHPYGMSLQV LSEEENRGVE  180
LAQFLLAAVD RVGCQQFERA SMLLSHLLWN SSGGGGSPVQ RVVFHFSQAL LERIKRETRG  240
KVTLNKCEKN KEREMIEKLR LDTNMAVTCH EKIPFNQVMQ FAGVQAIVEH VAFQTRIHLI  300
NLDIGCGVQC TALMQALVER HERQVELLKI TAIGLQGKTR LEETGKRLVS FAESLNLPFL  360
YKIVFVRSIT EIKAEQFGIE DDEAVAVYCP YMLRTMVSDF VSLEHLMRVM TKIRPTIMIV  420
LELEAKHNSP SFVNRFIEAF FFYAAYFDCI YTCMKQDYEC RMRIEGILSE GIRNIVAMED  480
GERKVRDVKI DVWRRFFARY RMVETTFSDS SLYQANLKQL GEAANDALGT LSLKINQLKK  540
QIQVERIVYI KEKIQSNEKK LQCHTSGVLS TISTRGYSQT EENRKIPILS RIDRPLCKFN  600
GFSPVSGDKD HNNQDVLSAT SIKIPYIERL PPYTSWIFLD RNQRMAEDQS VVGRRRIYYD  660
QHGSEALICS DSEEELTEHE EEKHEFSEAE DRVLWMAFEE YGLNEEVLNI VSEFVGGKSS  720
EIQERYKSIK EKNIGRLDQP SENSGDLESI IGISPEKTLS AALDSFDNLF CRRCLQIFDC  780
RLHGCSQPLV YPSEKQTVWS DPEGDKKPCS DQCYLKQLNE VKGVSEDATS GSDQNKRTTT  840
MEEADGILAP STIEEPGNQS TSPFPTEVDC HRSLNLNVPI SVSVEKRKVT NVSDTALCDS  900
TPLPDGSQNS NKKLKTISDD VITVNSDSSN NLLGACDESK HTITCAILDK SVNNNSNKLI  960
DSSSTCDTDE HDKSIGDGPK DPTNKTELKK LSPSMEGKVD GMPGLSDWKP LEKELYLKGV  1020
EMFGRNSCLI ARNLLSGLKT CMEIATYMHA GGVSMPHGSI IAPSSIMDDK GKFDAEYTDQ  1080
EMPSRSRLLR KRGKTRKFKY SWKSTGHPSI WKRIADGKNQ SCKQYTPCGC QSMCGKEFVQ  1140
KAAKIDSEDA IVPRVSAEVD NVRVLLQDGN VTQMFVGIAG ATSYKFLETI VFFGTHKVGL  1200
VSCLTIELSK HQGQRRSPSP YIPSPVVVPP SEFVRCCGDG SLGEPPRRGE GQCGNMRLLL  1260
RQQQRILLAK SDVAGWGAFL KNPVNKNDYL GEYTGELISH READKRGKIY DRANSSFLFD  1320
LNDQYVLDAY RKGDKLKFAN HSSNPNCYAK VMLVAGDHRV GIFSKEHIDA SEELFYDYRY  1380
GPDQAPPWAR KPEGSKSDES TVCQGRAKKH QSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4mi5_A	1e-49	1253	1380	84	211	Histone-lysine N-methyltransferase EZH2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1088	1094	LRKRGKT

Functional Description ? help Back to Top
Source	Description
UniProt	Polycomb group (PcG) protein. Catalytic subunit of some PcG multiprotein complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g15980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017415213.1	0.0	PREDICTED: histone-lysine N-methyltransferase EZA1 isoform X1
Swissprot	Q9ZSM8	0.0	EZA1_ARATH; Histone-lysine N-methyltransferase EZA1
TrEMBL	A0A0S3SR18	0.0	A0A0S3SR18_PHAAN; Histone-lysine N-methyltransferase
STRING	XP_007145145.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF972	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	3e-27	RGA-like 1

Publications ? help Back to Top
Luo M,Bilodeau P,Dennis ES,Peacock WJ,Chaudhury A Expression and parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds. Proc. Natl. Acad. Sci. U.S.A., 2000. 97(19): p. 10637-42 [PMID:10962025] Springer NM, et al. Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiol., 2003. 132(2): p. 907-25 [PMID:12805620] Chanvivattana Y, et al. Interaction of Polycomb-group proteins controlling flowering in Arabidopsis. Development, 2004. 131(21): p. 5263-76 [PMID:15456723] Wang D,Tyson MD,Jackson SS,Yadegari R Partially redundant functions of two SET-domain polycomb-group proteins in controlling initiation of seed development in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(35): p. 13244-9 [PMID:16924116] Spillane C, et al. Positive darwinian selection at the imprinted MEDEA locus in plants. Nature, 2007. 448(7151): p. 349-52 [PMID:17637669] Johnston AJ,Matveeva E,Kirioukhova O,Grossniklaus U,Gruissem W A dynamic reciprocal RBR-PRC2 regulatory circuit controls Arabidopsis gametophyte development. Curr. Biol., 2008. 18(21): p. 1680-6 [PMID:18976913] Aichinger E, et al. CHD3 proteins and polycomb group proteins antagonistically determine cell identity in Arabidopsis. PLoS Genet., 2009. 5(8): p. e1000605 [PMID:19680533] Almada R, et al. Epigenetic repressor-like genes are differentially regulated during grapevine (Vitis vinifera L.) development. Plant Cell Rep., 2011. 30(10): p. 1959-68 [PMID:21681473] He C,Chen X,Huang H,Xu L Reprogramming of H3K27me3 is critical for acquisition of pluripotency from cultured Arabidopsis tissues. PLoS Genet., 2012. 8(8): p. e1002911 [PMID:22927830] Lindner M, et al. TAF13 interacts with PRC2 members and is essential for Arabidopsis seed development. Dev. Biol., 2013. 379(1): p. 28-37 [PMID:23506837] Footitt S,Müller K,Kermode AR,Finch-Savage WE Seed dormancy cycling in Arabidopsis: chromatin remodelling and regulation of DOG1 in response to seasonal environmental signals. Plant J., 2015. 81(3): p. 413-25 [PMID:25439058] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Xu M,Hu T,Smith MR,Poethig RS Epigenetic Regulation of Vegetative Phase Change in Arabidopsis. Plant Cell, 2016. 28(1): p. 28-41 [PMID:26704382] Wang H, et al. Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements. PLoS Genet., 2016. 12(1): p. e1005771 [PMID:26760036] de Lucas M, et al. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] Xu Y, et al. Regulation of Vegetative Phase Change by SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA. Plant Physiol., 2016. 172(4): p. 2416-2428 [PMID:27803189] Oliva M, et al. FIE, a nuclear PRC2 protein, forms cytoplasmic complexes in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(21): p. 6111-6123 [PMID:27811080] Wang H, et al. Correction: Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements. PLoS Genet., 2017. 13(1): p. e1006574 [PMID:28122004] Zhou Y,Romero-Campero FJ,Gómez-Zambrano Á,Turck F,Calonje M H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity. Genome Biol., 2017. 18(1): p. 69 [PMID:28403905] Zhou Y, et al. Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(18): p. 4833-4838 [PMID:28428341] Qiu Y,Liu SL,Adams KL Concerted Divergence after Gene Duplication in Polycomb Repressive Complexes. Plant Physiol., 2017. 174(2): p. 1192-1204 [PMID:28455403] Kim DH,Xi Y,Sung S Modular function of long noncoding RNA, COLDAIR, in the vernalization response. PLoS Genet., 2017. 13(7): p. e1006939 [PMID:28759577]