PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g16500.2
Common NameLR48_Vigan1086s000600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 193aa    MW: 21859.8 Da    PI: 5.493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g16500.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213355123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  C++ F++   L  H++ H
  Vang06g16500.2 33 YECVFCKRGFTTAQALGGHMNIH 55
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-63159No hitNo description
Gene3DG3DSA:3.30.160.604.9E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEFSCPEDSK TSSDEIDRSA AEQNDDMGTG RSYECVFCKR GFTTAQALGG HMNIHRKDRA  60
NRTKPSTSTK LDDTNTYADL GLYSASNPSY LSRGTYYSTL PDSEVDLNYN YYHHLYFPSH  120
ASAAKSPSHV QYSEVFCVEN QRDPHLLFGQ DWRQKGLTFY TNPLCVHGNK DKIENNTEED  180
DLDLELRLGH HP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g16500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411281.11e-144PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0L9TIH11e-143A0A0L9TIH1_PHAAN; Uncharacterized protein
STRINGXP_007144929.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-15C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]