PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g17500.1
Common NameLR48_Vigan02g124800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 279aa    MW: 30148.3 Da    PI: 5.3943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g17500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-10128172554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L++l+P+ +      K + a++L + v+Y+k L
  Vang06g17500.1 128 HSIAERLRRERIAERIRALQDLVPSvN------KTDRAAMLDEIVDYVKFL 172
                     99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-15121182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.145123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-15125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7128172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MANHPSEPPT DDFLDEILGL PTFASADHAD ASPMMLQLNS GDAAFHAPPY QLGLSLEQGK  60
GGFLSPEDAS GSGNRFRDDV VGTRPKNIVM LQVFHGQPMP TTVPTAPPLP PAVRPRMRAR  120
RGQATDPHSI AERLRRERIA ERIRALQDLV PSVNKTDRAA MLDEIVDYVK FLRLQVKVLS  180
MSRLGGAGAV APLVTDIPLS SVEEEGSEGR NQPAWEKWSN DGTERQVAKL MEENVGAAMQ  240
FLQSKALCIM PISLASAIYP SQPSDPSSIV KPETNPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g17500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-143AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415582.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-120UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0L9TWY60.0A0A0L9TWY6_PHAAN; Uncharacterized protein
STRINGXP_007144689.11e-161(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-103bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]