PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g19320.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 70aa    MW: 8099.44 Da    PI: 10.6678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g19320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-27960151
                    S---SHHHHHHHHHHHHHHHHHHH.HHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKA.eELSvLCdaevaviifsstgklyeyss 51
                    kr+enk+n qvtf+kRrng+lKKA +ELSvL d+eva+iifs++gklye+ss
  Vang06g19320.1  9 KRVENKINTQVTFAKRRNGLLKKAyYELSVLSDVEVALIIFSNRGKLYEFSS 60
                    799*********************55************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-33161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.403162IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-25262IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-201058IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-183960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGRGRVELKR VENKINTQVT FAKRRNGLLK KAYYELSVLS DVEVALIIFS NRGKLYEFSS  60
TSRYIYIHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-17162161MEF2 CHIMERA
6byy_B7e-17162161MEF2 CHIMERA
6byy_C7e-17162161MEF2 CHIMERA
6byy_D7e-17162161MEF2 CHIMERA
6bz1_A7e-17162161MEF2 CHIMERA
6bz1_B7e-17162161MEF2 CHIMERA
6bz1_C7e-17162161MEF2 CHIMERA
6bz1_D7e-17162161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis. {ECO:0000250}.
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g19320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-111AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022850778.11e-31MADS-box protein EJ2-like
SwissprotQ424647e-30AGL9_SOLLC; Agamous-like MADS-box protein AGL9 homolog
SwissprotQ8LLR21e-29MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A4D6KVL57e-33A0A4D6KVL5_VIGUN; MADS-box transcription factor
STRINGPOPTR_0004s11450.14e-31(Populus trichocarpa)
STRINGcassava4.1_030388m1e-31(Manihot esculenta)
STRINGcassava4.1_033922m8e-32(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.39e-32MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]