PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g20100.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 321aa    MW: 36599.4 Da    PI: 5.4443
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g20100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.88.2e-2599195186
        trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                     +Wt+ +v++Li a+ +++++ +++           +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++ 
  Vang06g20100.1  99 KWTDTMVRLLIMAVYYIGDEGGSEGtdkkkssgmlQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLET 193
                     7**************99999986433556788888**********************************************559*******9999 PP

        trihelix  85 le 86 
                     +e
  Vang06g20100.1 194 ME 195
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2197186No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEPNGLGAGM FSGLVGVENS LPPQQQQNPH HLQNHPQMVP YGPHHDTDPH HQHHNQSIKQ  60
GYPQYSSVKT KQQQQSALSD DDDDTSDPKK KMSLWQRMKW TDTMVRLLIM AVYYIGDEGG  120
SEGTDKKKSS GMLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDILGKGT  180
ACRVVENQSL LETMELSSKM KEENDDDSDE DDESEDDSDE EEDDSGEGGS RGHVGHGHED  240
MEDDNDGRSM RKKARKVRGV GVSAVMMQQL NAEVSGVFQD GGRSAWEKKQ WMRSRILQLE  300
EQQLSYQSQS YELEKQRLKW A
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g20100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414399.11e-140PREDICTED: DNA ligase 1-like
TrEMBLA0A0S3ST571e-139A0A0S3ST57_PHAAN; Uncharacterized protein
STRINGXP_007145268.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.14e-44sequence-specific DNA binding transcription factors