PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g20150.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 152aa    MW: 17855 Da    PI: 8.9025
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g20150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.2e-2056110357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k+ ++t++ql+ Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  Vang06g20150.1  56 KKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKN 110
                     56679************************************************95 PP
2HD-ZIP_I/II115.53.1e-3756138284
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                     kk+rl+++q+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++d +++e+++Le+ev
  Vang06g20150.1  56 KKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEV 138
                     9*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1941113IPR009057Homeodomain-like
PROSITE profilePS5007116.90851111IPR001356Homeobox domain
SMARTSM003895.3E-1854115IPR001356Homeobox domain
PfamPF000465.6E-1756110IPR001356Homeobox domain
CDDcd000868.12E-1556112No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2258119IPR009057Homeodomain-like
PRINTSPR000312.0E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000312.0E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEWNGSTRRY VPRPDSSFGF LYNYNYTPYP GIEVKQQSIA ESSSSMEKMN CGNQDKKKRL  60
TTDQLDSLES SFQKEIKLDP DRKMKLSKEL GLQPRQIAVW FQNRRARWKN KQLEHLYDSL  120
KQEFDVISKE KQKLEEEVGN EVEGYAERAS F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g20150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414288.14e-98PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR05e-44ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0L9TVJ62e-96A0A0L9TVJ6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3ST761e-96A0A0S3ST76_PHAAN; Uncharacterized protein
TrEMBLA0A1S3V4W61e-96A0A1S3V4W6_VIGRR; putative homeobox-leucine zipper protein ATHB-51
STRINGXP_007145270.12e-91(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-46homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]