PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g21080.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 195aa    MW: 21616.2 Da    PI: 9.6885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g21080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.79.6e-332109199
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k ltpsdv+k++rlv+pk++ae++         ++ + ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++
  Vang06g21080.1   2 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgggggDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHR 96 
                     99*****************************9977334447889************************************************887 PP

                     SSEE..EEEEE-S CS
              B3  87 rsefelvvkvfrk 99 
                      +  +l+++++r+
  Vang06g21080.1  97 ADAHRLFIGWRRR 109
                     79999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.54E-281100No hitNo description
Gene3DG3DSA:2.40.330.105.6E-391115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-311109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.862110IPR003340B3 DNA binding domain
PfamPF023621.8E-292109IPR003340B3 DNA binding domain
SMARTSM010193.2E-262110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL SGGGGGDSGE CKGLLLSFED ESGKCWRFRY  60
SYWNSSQSYV LTKGWSRYVK DKRLDAGDVV LFERHRADAH RLFIGWRRRR HGDTSPVHVS  120
GRAVGHGKSG DGSSKNEGGG ATGVGLGWTR GFYSAHPYPT HQQQLHNHQP LPYQYDCLHA  180
GCSISSIQIN NLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-4911097113B3 domain-containing transcription factor NGA1
5os9_B9e-4911097113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g21080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414019.11e-133PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8RYD35e-60Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A0L9TWH21e-132A0A0L9TWH2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3STG61e-132A0A0S3STG6_PHAAN; Uncharacterized protein
STRINGXP_007145337.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.25e-61B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]