PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22230.1
Common NameLR48_Vigan02g034300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 207aa    MW: 24048.5 Da    PI: 9.034
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-33171082102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed+++++++sw+++g++fvvl++ efa+++Lp+ F h nf+SFvRQLn+YgF+kv++++         weF ++ F+kg+kell++
  Vang06g22230.1  17 FLLKTYMLVEDPTTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFVRQLNTYGFRKVRTSR---------WEFCNERFRKGEKELLCE 102
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+rkks
  Vang06g22230.1 103 IRRKKS 108
                     ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.5E-5013106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.5E-3614106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-3214106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-171740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3017106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-175567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEKGLLECVR KFSTAPFLLK TYMLVEDPTT NDVVSWNDDG TTFVVLQPAE FARDLLPTLF  60
NHCNFSSFVR QLNTYGFRKV RTSRWEFCNE RFRKGEKELL CEIRRKKSWV SKKQHGPQDS  120
DEDQRSLAST FSSNYAVLMH ENKRLKKENE VLHSELTTIN TKCRDLLDLV TKYSCAKAEG  180
LDHKPMLFRI TLEQVQGQTQ VKNNTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-23141061104Putative transcription factor
5d5x_B3e-23141061104Putative transcription factor
5d5x_E3e-23141061104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g22230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412864.11e-154PREDICTED: heat stress transcription factor B-3-like
SwissprotO222304e-60HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0L9TUC21e-152A0A0L9TUC2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SU321e-152A0A0S3SU32_PHAAN; Uncharacterized protein
STRINGXP_007145595.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-62heat shock transcription factor B3
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]