PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g24180.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 211aa    MW: 23002.7 Da    PI: 9.1797
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g24180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP56.48.2e-181452677
                    HHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP 26 vhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                    +hsk+p+v+v+gleqr       fh lsefD++krsCrrrLa+hnerrrk+ 
  Vang06g24180.1  1 MHSKSPTVIVAGLEQR-------FHLLSEFDQGKRSCRRRLAGHNERRRKPP 45
                    69************97.......7**************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-7131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-16149IPR004333Transcription factor, SBP-box
PROSITE profilePS5114115.717144IPR004333Transcription factor, SBP-box
PfamPF031106.2E-10243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MHSKSPTVIV AGLEQRFHLL SEFDQGKRSC RRRLAGHNER RRKPPPSSML TSRNGRLSSS  60
IFADNNGRAG GFLMEFASYP KLTLRNTLPT PRSAEPLPGN HAATWQTGSD TPSEFFMHGS  120
GSGGTSFLGS KHPFVESYTG VAAIHQLPNA TSWYLKALDS PEGVPDLGLG QISPSLHSHL  180
DGELDLPHQG RRHYMDLGDS RACESPQWSL *
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g24180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-129AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413913.11e-137PREDICTED: squamosa promoter-binding-like protein 9
SwissprotA3C0576e-23SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0S3SUI61e-133A0A0S3SUI6_PHAAN; Uncharacterized protein
STRINGXP_007145670.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-20squamosa promoter binding protein-like 9