PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g24910.1

Common Name

LR48_Vigan02g016800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 213aa MW: 24047.5 Da PI: 8.237

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g24910.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.1	4e-22	24	71	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +n+ n vtfskRr+gi+KKA+EL +LC++++avi+fs++++++ + Vang06g24910.1 24 KMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSF 71 679*****************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.4E-32	15	74	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.558	15	75	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.36E-27	16	92	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.94E-33	16	83	No hit	No description
PRINTS	PR00404	2.0E-18	17	37	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-23	25	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-18	37	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-18	52	73	IPR002100	Transcription factor, MADS-box
Gene3D	G3DSA:1.20.142.10	5.6E-4	107	178	IPR004102	Poly(ADP-ribose) polymerase, regulatory domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006471	Biological Process	protein ADP-ribosylation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDSKNMAKKT MKKTKGRQKI EIKKMSNEHN LRVTFSKRRT GIFKKASELA TLCGVDIAVI 60 MFSPSNQVFS FGSPNVDPVI QRYTAQGPPP LLTLDLNEAH STVDEGELHA QLNNLSDQMA 120 AEKKHEEALK RLMKDVEEHS WWAMPMDSMN DAQLEKYKKM LEDLKECVNE KREKLLLQTT 180 FAYNSPTQFL TGGNNSFSSV DNSETIHPPL SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3kov_B	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3kov_I	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3kov_J	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3mu6_A	1e-18	16	85	1	70	Myocyte-specific enhancer factor 2A
3mu6_B	1e-18	16	85	1	70	Myocyte-specific enhancer factor 2A
3mu6_C	1e-18	16	85	1	70	Myocyte-specific enhancer factor 2A
3mu6_D	1e-18	16	85	1	70	Myocyte-specific enhancer factor 2A
3p57_A	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3p57_B	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3p57_C	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3p57_D	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3p57_I	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
3p57_J	1e-18	16	89	1	74	Myocyte-specific enhancer factor 2A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g24910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017412836.1	1e-159	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0L9TTW3	1e-157	A0A0L9TTW3_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SUJ2	1e-157	A0A0S3SUJ2_PHAAN; Uncharacterized protein
STRING	XP_007145776.1	1e-142	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13864	5	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-43	AGAMOUS-like 62

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]