PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g24910.2
Common NameLR48_Vigan02g016800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23471.9 Da    PI: 8.2384
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g24910.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.8e-221966249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + +n+ n  vtfskRr+gi+KKA+EL +LC++++avi+fs++++++ +
  Vang06g24910.2 19 KMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSF 66
                    679*****************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-321069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.5581070IPR002100Transcription factor, MADS-box
CDDcd002651.38E-331178No hitNo description
SuperFamilySSF554554.97E-271187IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-181232IPR002100Transcription factor, MADS-box
PfamPF003195.6E-232066IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-184768IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.142.105.3E-4102173IPR004102Poly(ADP-ribose) polymerase, regulatory domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006471Biological Processprotein ADP-ribosylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAKKTMKKTK GRQKIEIKKM SNEHNLRVTF SKRRTGIFKK ASELATLCGV DIAVIMFSPS  60
NQVFSFGSPN VDPVIQRYTA QGPPPLLTLD LNEAHSTVDE GELHAQLNNL SDQMAAEKKH  120
EEALKRLMKD VEEHSWWAMP MDSMNDAQLE KYKKMLEDLK ECVNEKREKL LLQTTFAYNS  180
PTQFLTGGNN SFSSVDNSET IHPPLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-181184174Myocyte-specific enhancer factor 2A
3kov_B1e-181184174Myocyte-specific enhancer factor 2A
3kov_I1e-181184174Myocyte-specific enhancer factor 2A
3kov_J1e-181184174Myocyte-specific enhancer factor 2A
3mu6_A1e-181180170Myocyte-specific enhancer factor 2A
3mu6_B1e-181180170Myocyte-specific enhancer factor 2A
3mu6_C1e-181180170Myocyte-specific enhancer factor 2A
3mu6_D1e-181180170Myocyte-specific enhancer factor 2A
3p57_A1e-181184174Myocyte-specific enhancer factor 2A
3p57_B1e-181184174Myocyte-specific enhancer factor 2A
3p57_C1e-181184174Myocyte-specific enhancer factor 2A
3p57_D1e-181184174Myocyte-specific enhancer factor 2A
3p57_I1e-181184174Myocyte-specific enhancer factor 2A
3p57_J1e-181184174Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g24910.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412836.11e-155PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A0L9TTW31e-154A0A0L9TTW3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SUJ21e-154A0A0S3SUJ2_PHAAN; Uncharacterized protein
STRINGXP_007145776.11e-138(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-43AGAMOUS-like 62
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]