PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g24910.4
Common NameLR48_Vigan02g016800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 189aa    MW: 21214 Da    PI: 5.2984
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g24910.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF688.9e-22247449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +n+ n  vtfskRr+gi+KKA+EL +LC++++avi+fs++++++ +
  Vang06g24910.4  2 SNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSF 47
                    79999*************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.058151IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-20150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-22268IPR002100Transcription factor, MADS-box
PfamPF003199.1E-23247IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-91328IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-92849IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.142.101.4E-470154IPR004102Poly(ADP-ribose) polymerase, regulatory domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006471Biological Processprotein ADP-ribosylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSNEHNLRVT FSKRRTGIFK KASELATLCG VDIAVIMFSP SNQVFSFGSP NVDPVIQRYT  60
AQGPPPLLTL DLNEAHSTVD EGELHAQLNN LSDQMAAEKK HEEALKRLMK DVEEHSWWAM  120
PMDSMNDAQL EKYKKMLEDL KECVNEKREK LLLQTTFAYN SPTQFLTGGN NSFSSVDNSE  180
TIHPPLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g24910.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412836.11e-140PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A0L9TTW31e-139A0A0L9TTW3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SUJ21e-139A0A0S3SUJ2_PHAAN; Uncharacterized protein
STRINGXP_007145776.11e-126(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-38AGAMOUS-like 62
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]