PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25570.1
Common NameLR48_Vigan02g009700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 128aa    MW: 14519 Da    PI: 6.8118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-201161255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrdps++g   r +lg+f +aeeAa+a+++a+  ++g
  Vang06g25570.1 11 RYRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFESAEEAARAYDHAAFTMRG 61
                    6********.**********98865..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-231170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-321171IPR001471AP2/ERF domain
CDDcd000187.97E-291170No hitNo description
PfamPF008478.4E-141161IPR001471AP2/ERF domain
SMARTSM003802.5E-361175IPR001471AP2/ERF domain
PROSITE profilePS5103224.8031169IPR001471AP2/ERF domain
PRINTSPR003672.8E-111223IPR001471AP2/ERF domain
PRINTSPR003672.8E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
LKETKAAEKV RYRGVRRRPW GKYAAEIRDP SKQGSRLWLG TFESAEEAAR AYDHAAFTMR  60
GRVAILNFPN EYRSHASSSI TDENASSSSS ITHANGGQQR QVFEFEYLDD KVLEELLQFE  120
EKNNTES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-3861249126Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g25570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-123AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412817.11e-86PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9TU943e-85A0A0L9TU94_PHAAN; Uncharacterized protein
STRINGXP_007145843.12e-58(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-37ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]