PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g26170.1
Common NameLR48_Vigan02g008200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 209aa    MW: 23568.8 Da    PI: 4.6428
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g26170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-17564148
                     TSSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+ +++++G g              W++Ia++++ gRt++++k+ w+++l
   Vang06g26170.1  5 KGPWTQDEDQILISYIQKHGHGnwralpklagtssMWSAIAAKLP-GRTDNEIKNVWHTHL 64
                     79*******************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.652168IPR017930Myb domain
SuperFamilySSF466892.69E-15271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-23365IPR009057Homeodomain-like
SMARTSM007172.2E-13466IPR001005SANT/Myb domain
PfamPF002496.4E-15564IPR001005SANT/Myb domain
CDDcd001671.66E-11764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGLKKGPWTQ DEDQILISYI QKHGHGNWRA LPKLAGTSSM WSAIAAKLPG RTDNEIKNVW  60
HTHLKKKLLN SDSKRVVSNP KIKRSDSNSS TLTSSSACTS SSDFSSFSEE NKSTNNNSMI  120
KSEDTESEET TMPPIDESFW SEATVEDESS TMMMPSNSWT ISNEPQFNHV ETFQQHSFGY  180
NGSNFDDGMD FWYDIFIRSE ESIELPEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g26170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414677.11e-121PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0L9TU471e-120A0A0L9TU47_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SUZ41e-120A0A0S3SUZ4_PHAAN; Uncharacterized protein
STRINGGLYMA02G00820.14e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-32myb domain protein 14
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]