PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0714s00020.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 274aa MW: 31557.8 Da PI: 7.1907

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0714s00020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.2	3.5e-15	52	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA + GF +r ++s+k+++n+ +vC + k + ++ + r++ +C a++ v+k+ d+kw+++ ++ H+H+l+p Vang0714s00020.1 52 SFYRQYAISKGFGIRARTSRKNNKNE-LCYFMMVCFRAAKFVSPIEN---QMIARPTLDNDCAARMIVSKR-DAKWYISAFDDVHSHDLSP 137 5******************96666.88899**999998877...788999999********.**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-13	52	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-22	203	272	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDMEHINTSF DDIEFHEEHD NVEEELNENH IQPNSIPPIV RMVFETINEV KSFYRQYAIS 60 KGFGIRARTS RKNNKNELCY FMMVCFRAAK FVSPIENQMI ARPTLDNDCA ARMIVSKRDA 120 KWYISAFDDV HSHDLSPTKS RLFRGNKRMN LNVKRTLDLN AEAGVRINKS FRSLIDVDDD 180 NRILNVFWAD ARSRAACEYF GDVISFDTTY LTNKYDMPFA PFVGVNHHGQ SILLGCGLLC 240 SKDTNSFVWL FNSWLRCMSN RPPQGIVTDS AKQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0714s00020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423615.1	1e-168	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_017441089.1	1e-173	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S3V023	1e-154	A0A1S3V023_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S3W1J1	1e-157	A0A1S3W1J1_VIGRR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_007134998.1	1e-91	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-37	far-red elongated hypocotyls 3