PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0717s00040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 63aa    MW: 7458.68 Da    PI: 10.6391
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0717s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.99.5e-27252150
                      S---SHHHHHHHHHHHHHHHHHHH.HHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKA.eELSvLCdaevaviifsstgklyeys 50
                      kri+n++nrqvtf+kRrng+l  A +ELSvLCd+eva+iifs++gklye+ 
  Vang0717s00040.1  2 KRIKNQINRQVTFAKRRNGLLNNAyYELSVLCDTEVALIIFSNRGKLYEFR 52
                      79**********************55***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.535155IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-21157IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-21154IPR002100Transcription factor, MADS-box
PfamPF003193.4E-21351IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-111732IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-113253IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
LKRIKNQINR QVTFAKRRNG LLNNAYYELS VLCDTEVALI IFSNRGKLYE FRSTSRYMYI  60
HK*
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0717s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-98AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546327.19e-26PREDICTED: agamous-like MADS-box protein AGL9 homolog
SwissprotQ396852e-24CMB1_DIACA; MADS-box protein CMB1
SwissprotQ7Y0403e-24EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A151SPN81e-25A0A151SPN8_CAJCA; Agamous-like MADS-box protein AGL9 isogeny
TrEMBLA0A4D6KVL51e-25A0A4D6KVL5_VIGUN; MADS-box transcription factor
STRINGcassava4.1_030388m3e-25(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.32e-26MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]