PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0789s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29718.3 Da    PI: 6.5192
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0789s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.62.2e-25959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++ rqvtfskRr g++KK +ELSvLCda++ +iifsstgk+  +++
  Vang0789s00010.1  9 KRIENTTTRQVTFSKRRGGLIKKTKELSVLCDAQIGIIIFSSTGKMWQWCT 59
                      79***********************************************96 PP
2K-box63.11e-211071911195
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       ++  e+  +++a L++e+  L+  + ++lGed++ L++++L +Le++Le+s+ k+R+++nell +q+e+l++ke+ l+een++L+
  Vang0789s00010.1 107 DHPREEFIHDMAMLRQETLRLELGIQRYLGEDIGCLQFEDLTKLEEELENSVAKVRNRQNELLQQQMENLRRKERILEEENNNLS 191
                       555667778999***********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.913161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-27261IPR002100Transcription factor, MADS-box
CDDcd002654.43E-362102No hitNo description
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.563110207IPR002487Transcription factor, K-box
PfamPF014862.0E-19110192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRGGLIK KTKELSVLCD AQIGIIIFSS TGKMWQWCTE  60
PFRCMPTTPS FPFLSDPLLL NFVQLLKMEQ IIEKYQRATG ARIAECDHPR EEFIHDMAML  120
RQETLRLELG IQRYLGEDIG CLQFEDLTKL EEELENSVAK VRNRQNELLQ QQMENLRRKE  180
RILEEENNNL SNWEHRAVLE FEKATLEASK PMHMMDQFPF FEEQSAGSIL QLASPVLPHF  240
HPYLQLAQPN IKPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16159159MEF2C
5f28_B2e-16159159MEF2C
5f28_C2e-16159159MEF2C
5f28_D2e-16159159MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0789s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-143AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427102.11e-163PREDICTED: protein TRANSPARENT TESTA 16
TrEMBLA0A0L9UU611e-162A0A0L9UU61_PHAAN; Uncharacterized protein
STRINGXP_007153067.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-46MIKC_MADS family protein