PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0789s00080.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 126aa MW: 13547.5 Da PI: 6.7924

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0789s00080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	79.6	8.3e-25	1	50	24	73
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ Vang0789s00080.1 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFS 50 9*****************************************99999666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.861	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.4E-20	1	55	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPATFS TVSDHKPLLP 60 PPTPFILGKR IRPDDTDAVS KDEAVSLVAP PTPPALWALP PRPDFSQFLR GEVHELRNSI 120 GLGFS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0789s00080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-179	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027914125.1	9e-72	transcription factor TCP7-like
Swissprot	Q9FMX2	5e-43	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A4D6LM38	2e-70	A0A4D6LM38_VIGUN; Transcription factor TCP subgroup
STRING	XP_007153062.1	2e-68	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-23	TCP family protein