PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g00120.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 149aa    MW: 17465 Da    PI: 10.264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1956110357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++++++eq++ Le+ F +++++  e++ +LA +lgL+ rqV vWFqNrRa++k+
  Vang07g00120.1  56 RKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 110
                     45589************************************************95 PP
2HD-ZIP_I/II111.36.5e-3655138184
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                     ++kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++++a   e++rLe+ev
  Vang07g00120.1  55 NRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKSHEANLLEKCRLETEV 138
                     58******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.10351111IPR001356Homeobox domain
SMARTSM003892.7E-1754115IPR001356Homeobox domain
SuperFamilySSF466891.33E-1856120IPR009057Homeodomain-like
PfamPF000469.3E-1756110IPR001356Homeobox domain
CDDcd000862.91E-1456112No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2158118IPR009057Homeodomain-like
PRINTSPR000312.0E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000312.0E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MNHRPFQDNM MFIPQLYPAD APYTQIIAQQ GESKKPKRRR GKKNKGGENG ASEANRKRKL  60
SAEQVNLLEQ NFGNEHKLES ERKDRLALEL GLDPRQVAVW FQNRRARWKN KKLEEEYSHL  120
KKSHEANLLE KCRLETEVYL FFCPISLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542PKRRRGKK
23758RRRGKKNKGGENGASEANRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g00120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426828.13e-97PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232081e-54ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0L9UQY26e-96A0A0L9UQY2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T4D06e-96A0A0S3T4D0_PHAAN; Uncharacterized protein
STRINGXP_007156908.13e-80(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-49homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]