PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g01470.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 371aa    MW: 41098.5 Da    PI: 5.853
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g01470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS136.92.1e-421613282177
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e L+++A+++++++l+ aq +L+rl+++ +sp g+p+qR+a+yf+eAL++ l++      +  +p+ +s  + ++ +  +k+fs +sPi+ fs 
  Vang07g01470.1 161 IEELIRAADCFDTKQLHVAQVILERLNQRlRSPVGKPLQRAAFYFKEALQSLLSG------SNRTPRISSLVEIVHGIRTFKAFSGISPIPMFSI 249
                     679*************************99*************************......5556666666678999999999************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     +t+Nq +l+ +  ++ +H+iDfdi+ G+Q+++L++++a+++ ++p lRiT+v+++e   + e   ++e+La+fA el++ ++
  Vang07g01470.1 250 FTTNQVVLDHA-ACSFMHVIDFDIGLGIQYASLMKEIAEKATESPLLRITAVVPEE--YAVESTLVRENLAQFALELRIGVQ 328
                     *********86.5899**************************************66..8999999************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.004134370IPR005202Transcription factor GRAS
PfamPF035147.2E-40161328IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MRVPVPSSPQ ANPKPTNNLL RTIALPNLNT TGLCYEPTSV LDLCRSPSPG SEKPTDHSVV  60
VTDSQDCLDL DDHALHNLDW DSIMKDLGLH DDSGAPLLKT IPHPDNNNNN PCDDFTIAPF  120
DHAIEFSTLS DIYSNQNLSF DFNHLVHDFS NQHHNNGFDF IEELIRAADC FDTKQLHVAQ  180
VILERLNQRL RSPVGKPLQR AAFYFKEALQ SLLSGSNRTP RISSLVEIVH GIRTFKAFSG  240
ISPIPMFSIF TTNQVVLDHA ACSFMHVIDF DIGLGIQYAS LMKEIAEKAT ESPLLRITAV  300
VPEEYAVEST LVRENLAQFA LELRIGVQRR NAAGSFEPVC GFPSRVLVGQ VANQRLPRGK  360
TSERTYTVLA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g01470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426456.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232102e-81SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0L9UQT80.0A0A0L9UQT8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T4P40.0A0A0S3T4P4_PHAAN; Uncharacterized protein
STRINGXP_007156910.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.14e-75GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]