PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang07g02020.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 218aa MW: 24824.4 Da PI: 8.3652

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang07g02020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	86.1	4.7e-27	43	110	2	69
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SS CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdee 69 Fl+k+ye+++d+ ++e+isws++gn+fvv+++ efak++Lpk Fkh+nf+SFvRQLn+Y kk +++ Vang07g02020.1 43 FLTKTYELVDDPGTNEVISWSDSGNTFVVWKHAEFAKDLLPKCFKHNNFSSFVRQLNTYKLKKDNETL 110 9***********************************************************99977654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.7E-28	34	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-31	39	145	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.31E-24	40	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.7E-23	43	135	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.0E-17	43	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.0E-17	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.0E-17	94	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MFGSVLYKSL SRPRILEEEN NKSIHEEICE GEIMSQRSVP APFLTKTYEL VDDPGTNEVI 60 SWSDSGNTFV VWKHAEFAKD LLPKCFKHNN FSSFVRQLNT YKLKKDNETL SCELARARKQ 120 CDELVAFLKN RLMVGPDQID RIMRQGSCGS EKAVGEEGGG ECLKLFGVWL KEDTLADKRN 180 NKNKRAREDQ MGFGGPRLKK SKPVVDFEPI NLIMTSNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-20	38	105	25	91	Heat shock factor protein 1
5d5v_B	4e-20	38	105	25	91	Heat shock factor protein 1
5d5v_D	4e-20	38	105	25	91	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang07g02020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017426729.1	8e-78	PREDICTED: heat shock factor protein HSF24
Swissprot	P22335	8e-33	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A0L9UQL8	2e-76	A0A0L9UQL8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T4Q5	2e-76	A0A0S3T4Q5_PHAAN; Uncharacterized protein
STRING	XP_007156806.1	2e-72	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1592	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	1e-33	heat shock factor 4

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]