PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g02950.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 312aa    MW: 33965.6 Da    PI: 10.6196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g02950.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-111868146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
   Vang07g02950.3 18 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 68
                     79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.9581374IPR017930Myb domain
SuperFamilySSF466897.1E-151580IPR009057Homeodomain-like
SMARTSM007172.9E-51772IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-121869IPR009057Homeodomain-like
PfamPF002493.2E-71868IPR001005SANT/Myb domain
CDDcd116603.83E-171970No hitNo description
PROSITE profilePS5150422.852128204IPR005818Linker histone H1/H5, domain H15
SMARTSM005266.8E-13134199IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.63E-16137213IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-15139204IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.5E-10141197IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
LWMRLKKGFG LILMGAPKQK WTAEEEAALK AGVVKHGAGK WRTILTDPEF SSILRMRSNV  60
DLKDKWRNIN VTAIWGSRQK AKLALKKNLL PSPKIDNNHM ALSTAVQRDR GAADPKPLAV  120
SGAISPNSKE KVSRLQNFQL DNIILESIIK LKEPKGSDRA AIASYIEDQY CSTPTLRKLL  180
STKLKHMVAS GKLMKVKHKY RIATNLTISE KRRCSSLLLL EGRPKDSPKT EKTGVNILSK  240
SEIDAELSKM KGVTPQEAAA AAAKAVAEAE AAIAEAEAAA READTAEAEA EAARVFAKAA  300
IKALKCKTLH I*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g02950.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425981.10.0PREDICTED: telomere repeat-binding factor 2-like
RefseqXP_017425982.10.0PREDICTED: telomere repeat-binding factor 2-like
RefseqXP_017425983.10.0PREDICTED: telomere repeat-binding factor 2-like
RefseqXP_017425984.10.0PREDICTED: telomere repeat-binding factor 2-like
SwissprotQ9FJW53e-74TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0S3T5H30.0A0A0S3T5H3_PHAAN; Uncharacterized protein
STRINGXP_007156706.11e-180(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-68telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]