PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03230.1
Common NameLR48_Vigan06g020600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LSD
Protein Properties Length: 162aa    MW: 16917.8 Da    PI: 8.0756
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1421.5e-134670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  Vang07g03230.1 46 CSGCRNLLLYPVGATSVCCAVCNAV 70
                    ************************9 PP
2zf-LSD146.65.7e-1583107125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggC+tlL+Y rGA+sV+C++C+tV
  Vang07g03230.1  83 CGGCHTLLMYIRGATSVQCSCCHTV 107
                     ************************9 PP
3zf-LSD134.43.7e-11121145125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C+ lL+Y +GA+sV+Ca+C +V
  Vang07g03230.1 121 CGNCKMLLRYQYGARSVKCAVCSFV 145
                     **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.9E-124373IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-104670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-1480109IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1283107IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.9E-10118148IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-10121145IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MPVPLAPYPP PLPPPPYAPP PNGTFAYSTL SLFAIHVGGP QSHLVCSGCR NLLLYPVGAT  60
SVCCAVCNAV TTVPPPEMAQ LVCGGCHTLL MYIRGATSVQ CSCCHTVNLA LEANQVAHVN  120
CGNCKMLLRY QYGARSVKCA VCSFVTLVGA STSTTEQKFN T*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-110BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426634.11e-83PREDICTED: protein LOL1-like isoform X1
RefseqXP_017426635.12e-83PREDICTED: protein LOL1-like isoform X2
SwissprotQ93ZB18e-73LOL1_ARATH; Protein LOL1
TrEMBLA0A0L9UPS31e-111A0A0L9UPS3_PHAAN; Uncharacterized protein
STRINGcassava4.1_018557m6e-79(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-63lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]