PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03310.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 239aa    MW: 26173.9 Da    PI: 7.6664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03310.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-057294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C + F++   L  H+++H
  Vang07g03310.2 72 YTCTYCRREFRSAQALGGHMNVH 94
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-66999No hitNo description
SMARTSM003550.00577294IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-77295IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3447299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTQIQKLSQS QHPKKQQPQP NPNITTTTPS SWMWNPSQQL HHQEDDDDSW EVRAFAEDTR  60
NIMGTTWPPR SYTCTYCRRE FRSAQALGGH MNVHRRDRAR LNQPPPSSTA ISSLPTSSPY  120
INIPPQDLVA NAGLCLLYHL PPSPSAPPFS NSPSTNTLSS SPSPSTLLSI SSYPSTNFLM  180
QTSFNFPGAP STGINTATVS SFYSSKVEQS ATSSSFAAGH LEELDLELRL GHKPTQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-136794229superman protein
2l1o_A5e-136794229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g03310.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427025.11e-174PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A0S3T5711e-173A0A0S3T571_PHAAN; Uncharacterized protein
STRINGXP_007156668.14e-91(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-35C2H2 family protein