PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g06680.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 251aa    MW: 27641.9 Da    PI: 4.9157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g06680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-203990156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    ++++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ kl+g+
  Vang07g06680.1 39 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAALVYDNAAIKLRGP 90
                    59********.**********84....34*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.60E-333996No hitNo description
PfamPF008472.7E-134089IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-304096IPR001471AP2/ERF domain
PROSITE profilePS5103223.5784097IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-214096IPR016177DNA-binding domain
SMARTSM003801.6E-3640103IPR001471AP2/ERF domain
PRINTSPR003672.6E-104152IPR001471AP2/ERF domain
PRINTSPR003672.6E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIKVAAPYFI SVKGRPRVRR RSVVGKGRVA ETPRGSTGKK FRGVRQRPWG KWAAEIRDPS  60
RRVRLWLGTY DTAEEAALVY DNAAIKLRGP DALTNFITPP ATWHNKDQTP VSNGYASVEE  120
TQNKNLFSPT SVLHSCSLSE EAESVTGKDD DYSSVSESSK AKAESPFPVP IPIPSELKFD  180
FEDCLAAPDV YGELDGAAAA ESVLFSDDDW PGVFLTACED FGLKSWHADR NHDFFQDIDD  240
LFVSDPLLAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213696162ATERF1
3gcc_A3e-213696162ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g06680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407214.11e-172PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A0L9T9751e-171A0A0L9T975_PHAAN; Uncharacterized protein
STRINGXP_007158558.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-39cytokinin response factor 1