PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0815s00010.1
Common NameLR48_Vigan03g164800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 193aa    MW: 22440 Da    PI: 6.6653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0815s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.3e-101653148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l++++  +G g          ++Rt+k+c++rw++yl
  Vang0815s00010.1 16 KGPWTMEEDLILINYISNHGEG----------LKRTGKSCRLRWLNYL 53
                      79******************99..........68************97 PP
2Myb_DNA-binding55.81e-1759102146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Vang0815s00010.1  59 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 102
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-16956IPR009057Homeodomain-like
PROSITE profilePS5129411.151153IPR017930Myb domain
SuperFamilySSF466891.57E-2613100IPR009057Homeodomain-like
SMARTSM007174.4E-51555IPR001005SANT/Myb domain
PfamPF002491.3E-81653IPR001005SANT/Myb domain
CDDcd001671.16E-51853No hitNo description
PROSITE profilePS5129425.85954108IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2557108IPR009057Homeodomain-like
SMARTSM007171.8E-1558106IPR001005SANT/Myb domain
PfamPF002491.4E-1659102IPR001005SANT/Myb domain
CDDcd001674.76E-1263102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDKKQCNTSQ DPEVRKGPWT MEEDLILINY ISNHGEGLKR TGKSCRLRWL NYLRPDVRRG  60
NITPEEQLLI MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ AENSQQQSNS  120
NSEINDHQAS TSQVSTMAEP METYSSPCYQ GMLEPFSTQF PNIPDQSSCC TNENNNYWSM  180
EDIWSMQLLN GD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241110822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0815s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027927196.11e-137myb-related protein 305-like
SwissprotP813916e-85MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A4D6NE491e-136A0A4D6NE49_VIGUN; Myb proto-oncogene protein
STRINGXP_007140962.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-76myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]