PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0874s00010.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 973aa MW: 109608 Da PI: 5.5609

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0874s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	119.6	1.6e-37	47	173	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg........vevlycyYahs 88 ++rwl++ ei++iL n++ +++t+e++trp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK evl+cy a Vang0874s00010.1 47 AQNRWLRPAEICEILCNYRMFQITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKASMnflffslwWEVLMCYTATM 139 499*******************************************************************999**999999987 PP CG-1 89 ...eenptfqrrcywlLe.eelekivlvhylevk 118 ++ + f+ L+ e++ +iv+vhyl+vk Vang0874s00010.1 140 pmeKKMKIFRGEAIGCLNsEDMMHIVFVHYLDVK 173 66567777888888777625689*******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	53.484	40	178	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.9E-45	43	173	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-31	46	172	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.5E-4	560	648	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.2E-16	562	648	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.2E-5	562	647	IPR002909	IPT domain
SuperFamily	SSF48403	1.87E-10	747	816	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.1E-9	754	815	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.51E-7	761	817	No hit	No description
PROSITE profile	PS50297	13.894	762	827	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50096	6.961	818	842	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MAERGSYGLG PRLATSSSVL EEPAVSVVEM FKQSLCIQDL QQLQLEAQNR WLRPAEICEI 60 LCNYRMFQIT SEPPTRPPSG SLFLFDRKVL RYFRKDGHNW RKKKDGKTVK EAHEKLKASM 120 NFLFFSLWWE VLMCYTATMP MEKKMKIFRG EAIGCLNSED MMHIVFVHYL DVKVFYLFSL 180 FHAFTQAFRF LSRSRNVSLH DFVVVEVLTR VNKTNVGGKT YSGEATSDSQ KGSSLSSGFP 240 RNYGSVPSGS TDSMSPTSTL TSLCEDADSE DIHQASSGSQ SYHESKCLGN DCPIDKIDAR 300 SNNSYLMHPS SGDRGQFPVP GSEYIPLIQG HRAHDIASWD DAMEQSSGKH TAPSLVSSTS 360 IPPSASGNIL EENNAVPGNL LGHKNVLIEE ERVSQALHSN WQIPFGDDTG ELPKWSLTQT 420 LGLEFGSDYG TSLLGDVAGS EILAEMFTFN GELKEKSVNQ NISKQYTNTQ SQPATKSNSD 480 YEVAGEASIN YTLTMKRGLL DGEESLKKVD SFSRWITKEF AGVDDLHTQS SPGISWNTDD 540 CGDVIDDTSL NLSLSQDQLF SINDFSPKWA YAESEIEVLI VGTFLKSQPM VTACNWSCMF 600 GEVEVPAEVL ANGILCCQAP PHKIGRVPFY ITCSNRFACS EVREFEYREG FDRNIDFTDL 660 FTSSTEMVLH LRLVGLLSLN SVHTSNQVLE DDMEKRNLIF KLISLKEEEE YSSREETTVE 720 IDVTKHKLKE HMFHKQVKEM LYSWLLHKVT ETGKGPLVLS EEGQGVLHLV AALGYDWAIK 780 PIITAGVNIN FRDVSGWTAL HWAAYCGRIK SILLFSNRSK TVEFMNAHVR GHQVRKQYRT 840 IIWSVGILEK VILRWRRKGS GLRGFRSDTV NKVIPDQPIE SPKEDDYDFL KEGRKQSEAR 900 FQKALSRVKS MVQYPEARAQ YRRVLNVVED FRQTKGDNLN SMNSEEAVDG VEDLIDIDML 960 LDDENFLPIA FD*

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MAERGSYGLG PRLATSSSVL EEPAVSVVEM FKQSLCIQDL QQLQLEAQNR WLRPAEICEI  60
LCNYRMFQIT SEPPTRPPSG SLFLFDRKVL RYFRKDGHNW RKKKDGKTVK EAHEKLKASM  120
NFLFFSLWWE VLMCYTATMP MEKKMKIFRG EAIGCLNSED MMHIVFVHYL DVKVFYLFSL  180
FHAFTQAFRF LSRSRNVSLH DFVVVEVLTR VNKTNVGGKT YSGEATSDSQ KGSSLSSGFP  240
RNYGSVPSGS TDSMSPTSTL TSLCEDADSE DIHQASSGSQ SYHESKCLGN DCPIDKIDAR  300
SNNSYLMHPS SGDRGQFPVP GSEYIPLIQG HRAHDIASWD DAMEQSSGKH TAPSLVSSTS  360
IPPSASGNIL EENNAVPGNL LGHKNVLIEE ERVSQALHSN WQIPFGDDTG ELPKWSLTQT  420
LGLEFGSDYG TSLLGDVAGS EILAEMFTFN GELKEKSVNQ NISKQYTNTQ SQPATKSNSD  480
YEVAGEASIN YTLTMKRGLL DGEESLKKVD SFSRWITKEF AGVDDLHTQS SPGISWNTDD  540
CGDVIDDTSL NLSLSQDQLF SINDFSPKWA YAESEIEVLI VGTFLKSQPM VTACNWSCMF  600
GEVEVPAEVL ANGILCCQAP PHKIGRVPFY ITCSNRFACS EVREFEYREG FDRNIDFTDL  660
FTSSTEMVLH LRLVGLLSLN SVHTSNQVLE DDMEKRNLIF KLISLKEEEE YSSREETTVE  720
IDVTKHKLKE HMFHKQVKEM LYSWLLHKVT ETGKGPLVLS EEGQGVLHLV AALGYDWAIK  780
PIITAGVNIN FRDVSGWTAL HWAAYCGRIK SILLFSNRSK TVEFMNAHVR GHQVRKQYRT  840
IIWSVGILEK VILRWRRKGS GLRGFRSDTV NKVIPDQPIE SPKEDDYDFL KEGRKQSEAR  900
FQKALSRVKS MVQYPEARAQ YRRVLNVVED FRQTKGDNLN SMNSEEAVDG VEDLIDIDML  960
LDDENFLPIA FD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0874s00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439272.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like
TrEMBL	A0A0S3R086	0.0	A0A0S3R086_PHAAN; Uncharacterized protein
STRING	XP_007159108.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	1e-166	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains