PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0874s00010.2

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 936aa MW: 105176 Da PI: 5.3035

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0874s00010.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	119.6	1.5e-37	47	173	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg........vevlycyYahs 88 ++rwl++ ei++iL n++ +++t+e++trp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK evl+cy a Vang0874s00010.2 47 AQNRWLRPAEICEILCNYRMFQITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKASMnflffslwWEVLMCYTATM 139 499*******************************************************************999**999999987 PP CG-1 89 ...eenptfqrrcywlLe.eelekivlvhylevk 118 ++ + f+ L+ e++ +iv+vhyl+vk Vang0874s00010.2 140 pmeKKMKIFRGEAIGCLNsEDMMHIVFVHYLDVK 173 66567777888888777625689*******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	54.818	40	178	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.9E-45	43	173	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-31	46	172	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.2E-4	523	611	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	3.97E-16	525	611	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.0E-5	525	610	IPR002909	IPT domain
SuperFamily	SSF48403	1.71E-10	710	779	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.0E-9	717	778	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.44E-7	724	780	No hit	No description
PROSITE profile	PS50297	13.894	725	790	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50096	6.961	781	805	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence Send to blast
MAERGSYGLG PRLATSSSVL EEPAVSVVEM FKQSLCIQDL QQLQLEAQNR WLRPAEICEI 60 LCNYRMFQIT SEPPTRPPSG SLFLFDRKVL RYFRKDGHNW RKKKDGKTVK EAHEKLKASM 120 NFLFFSLWWE VLMCYTATMP MEKKMKIFRG EAIGCLNSED MMHIVFVHYL DVKVNKTNVG 180 GKTYSGEATS DSQKGSSLSS GFPRNYGSVP SGSTDSMSPT STLTSLCEDA DSEDIHQASS 240 GSQSYHESKC LGNDCPIDKI DARSNNSYLM HPSSGDRGQF PVPGSEYIPL IQGHRAHDIA 300 SWDDAMEQSS GKHTAPSLVS STSIPPSASG NILEENNAVP GNLLGHKNVL IEEERVSQAL 360 HSNWQIPFGD DTGELPKWSL TQTLGLEFGS DYGTSLLGDV AGSEILAEMF TFNGELKEKS 420 VNQNISKQYT NTQSQPATKS NSDYEVAGEA SINYTLTMKR GLLDGEESLK KVDSFSRWIT 480 KEFAGVDDLH TQSSPGISWN TDDCGDVIDD TSLNLSLSQD QLFSINDFSP KWAYAESEIE 540 VLIVGTFLKS QPMVTACNWS CMFGEVEVPA EVLANGILCC QAPPHKIGRV PFYITCSNRF 600 ACSEVREFEY REGFDRNIDF TDLFTSSTEM VLHLRLVGLL SLNSVHTSNQ VLEDDMEKRN 660 LIFKLISLKE EEEYSSREET TVEIDVTKHK LKEHMFHKQV KEMLYSWLLH KVTETGKGPL 720 VLSEEGQGVL HLVAALGYDW AIKPIITAGV NINFRDVSGW TALHWAAYCG RIKSILLFSN 780 RSKTVEFMNA HVRGHQVRKQ YRTIIWSVGI LEKVILRWRR KGSGLRGFRS DTVNKVIPDQ 840 PIESPKEDDY DFLKEGRKQS EARFQKALSR VKSMVQYPEA RAQYRRVLNV VEDFRQTKGD 900 NLNSMNSEEA VDGVEDLIDI DMLLDDENFL PIAFD*

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence Send to blast

MAERGSYGLG PRLATSSSVL EEPAVSVVEM FKQSLCIQDL QQLQLEAQNR WLRPAEICEI  60
LCNYRMFQIT SEPPTRPPSG SLFLFDRKVL RYFRKDGHNW RKKKDGKTVK EAHEKLKASM  120
NFLFFSLWWE VLMCYTATMP MEKKMKIFRG EAIGCLNSED MMHIVFVHYL DVKVNKTNVG  180
GKTYSGEATS DSQKGSSLSS GFPRNYGSVP SGSTDSMSPT STLTSLCEDA DSEDIHQASS  240
GSQSYHESKC LGNDCPIDKI DARSNNSYLM HPSSGDRGQF PVPGSEYIPL IQGHRAHDIA  300
SWDDAMEQSS GKHTAPSLVS STSIPPSASG NILEENNAVP GNLLGHKNVL IEEERVSQAL  360
HSNWQIPFGD DTGELPKWSL TQTLGLEFGS DYGTSLLGDV AGSEILAEMF TFNGELKEKS  420
VNQNISKQYT NTQSQPATKS NSDYEVAGEA SINYTLTMKR GLLDGEESLK KVDSFSRWIT  480
KEFAGVDDLH TQSSPGISWN TDDCGDVIDD TSLNLSLSQD QLFSINDFSP KWAYAESEIE  540
VLIVGTFLKS QPMVTACNWS CMFGEVEVPA EVLANGILCC QAPPHKIGRV PFYITCSNRF  600
ACSEVREFEY REGFDRNIDF TDLFTSSTEM VLHLRLVGLL SLNSVHTSNQ VLEDDMEKRN  660
LIFKLISLKE EEEYSSREET TVEIDVTKHK LKEHMFHKQV KEMLYSWLLH KVTETGKGPL  720
VLSEEGQGVL HLVAALGYDW AIKPIITAGV NINFRDVSGW TALHWAAYCG RIKSILLFSN  780
RSKTVEFMNA HVRGHQVRKQ YRTIIWSVGI LEKVILRWRR KGSGLRGFRS DTVNKVIPDQ  840
PIESPKEDDY DFLKEGRKQS EARFQKALSR VKSMVQYPEA RAQYRRVLNV VEDFRQTKGD  900
NLNSMNSEEA VDGVEDLIDI DMLLDDENFL PIAFD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0874s00010.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439272.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like
TrEMBL	A0A0S3R086	0.0	A0A0S3R086_PHAAN; Uncharacterized protein
STRING	XP_007159108.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	1e-178	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains