PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g03340.1
Common NameLR48_Vigan11g118200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 549aa    MW: 59979.2 Da    PI: 7.2167
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g03340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-093453821954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Vang08g03340.1 345 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 382
                     554459******************************88 PP
2BELL102.23.9e-33217285472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     ++ +kk++Ll++l+eV++rY+qy++q+++v+ sFe v gl +a+pY+slA ka+S+hFrcLk+ai++q+
  Vang08g03340.1 217 DHGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLRNAAPYASLAIKAMSKHFRCLKNAITDQL 285
                     6789**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-49155283IPR006563POX domain
PfamPF075262.0E-37160282IPR006563POX domain
PROSITE profilePS5007112.131323386IPR001356Homeobox domain
CDDcd000862.30E-13326387No hitNo description
SMARTSM003891.5E-10326390IPR001356Homeobox domain
SuperFamilySSF466894.11E-17328393IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28329390IPR009057Homeodomain-like
PfamPF059209.5E-19343382IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
LGCGVKEERA NLMMGFAGRG GEGGGVMNNG SSSSLCCSSN SSSVSYLDPE SSLPLNQATI  60
QVINNNNMFL YQAQNLGEFD QGYNNNNGSE IMVFKPEPLS LSLSSHSNGV NLQRYGSVVC  120
GDKVSGVGGG GGCVVYGGSG LNEASRCTVP MGPFTGYASI LKGSRFLKPA QQLLEELCDV  180
GGVCAEKMVA DASLMEPVPL PPPENSSEDL LGDHGGDHGR KKSRLLTMLD EVYRRYRQYY  240
QQMHAVVTSF EYVSGLRNAA PYASLAIKAM SKHFRCLKNA ITDQLQFANK AHFHISNRKD  300
ESSRFGNSDR GPYSQRPGFL EHQPVWRPQR GLPERAVSVL RAWLFEHFLH PYPTDTDKLM  360
LAKQTGLSRS QVSNWFINAR VRLWKPMVEE IHMLETRQAQ NLKNSQKEEH CRNKSSDQLP  420
SDNSIVSENP SGSTEKFQGP PYKRATDELT NIPVRTQEQL NLPCTSNQPG GVEVSMGGSA  480
SNSVSLTLGL HQNHGIGLAE PFSLNAAQRF GVALETNNEG YVMSGYESQN RHFGRDVIGG  540
QLVHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-17332389158Homeobox protein Meis1
4xrs_B5e-17332389158Homeobox protein Meis1
5bng_A5e-17332390159Homeobox protein Meis2
5bng_B5e-17332390159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g03340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442577.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-120BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0L9VT730.0A0A0L9VT73_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SXH70.0A0A0S3SXH7_PHAAN; Uncharacterized protein
STRINGXP_007134014.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-106TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  6. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  7. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  8. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]