PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g03670.1
Common NameLR48_Vigan11g144300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 251aa    MW: 28943.2 Da    PI: 9.6185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g03670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-15453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +v+++G++ W++++++m+  ++R +k+c +rw +yl
   Vang08g03670.1  4 RQRWKAEEDALLCAYVREYGPREWNLVSHRMNtsLNRDAKSCLERWKNYL 53
                     89**********************************************97 PP
2Myb_DNA-binding34.45e-115994138
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k
   Vang08g03670.1 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAK 94
                     6788******************.*********.***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.241157IPR017930Myb domain
SMARTSM007172.1E-12355IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-21493IPR009057Homeodomain-like
PfamPF002495.8E-13453IPR001005SANT/Myb domain
CDDcd001675.92E-8653No hitNo description
Gene3DG3DSA:1.10.10.602.2E-19660IPR009057Homeodomain-like
SMARTSM007170.00355896IPR001005SANT/Myb domain
PROSITE profilePS5129411.17858101IPR017930Myb domain
PfamPF002494.2E-105994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-156194IPR009057Homeodomain-like
CDDcd001673.50E-66394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKERQRWKAE EDALLCAYVR EYGPREWNLV SHRMNTSLNR DAKSCLERWK NYLEPGIKKG  60
SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRPPSPS VTLSLSPSIA PPPPWLNVTT  120
PHGDNIVVLE LIECCKELEE GHHAMVAHRK EAAWLLRRVK QQLEAEKAGR RREKMEEIEA  180
KIKALGEEQN AALDRIETEY KEQIAGLRRD AESKEQKLVE EWNAKHMRVV KCMERQVGGR  240
IPRIDEPNGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-16792789MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-16792789C-Myb DNA-Binding Domain
1msf_C5e-16792789C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g03670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441481.11e-106PREDICTED: transcription factor AS1-like
RefseqXP_017441482.11e-106PREDICTED: transcription factor AS1-like
SwissprotQ9S7B29e-52RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A2P5RSJ21e-109A0A2P5RSJ2_GOSBA; Uncharacterized protein
TrEMBLA0A2P5W8G51e-109A0A2P5W8G5_GOSBA; Uncharacterized protein
STRINGCagra.18121s0004.1.p5e-99(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.19e-54MYB family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]