PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g03740.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 37aa    MW: 4265.12 Da    PI: 12.2733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g03740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.5e-13933125
                    S---SHHHHHHHHHHHHHHHHHHHH CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                    kri+ k+nrqvtf+kRrng+lKKA+
  Vang08g03740.1  9 KRIDKKINRQVTFAKRRNGLLKKAY 33
                    79**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.058136IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-4136IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-12133IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-13323IPR002100Transcription factor, MADS-box
PfamPF003196.8E-101033IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-132336IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 37 aa     Download sequence    Send to blast
MGRGRDKLKR IDKKINRQVT FAKRRNGLLK KAYMSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g03740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150425e-55AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-14MIKC_MADS family protein