PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang08g04450.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 160aa MW: 18114.3 Da PI: 8.3125

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang08g04450.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40	1e-12	27	106	6	81
trihelix 6 evlaLiearremeerlrrgklkkplWeevskkm.....rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpy 81 e+ +Li a++e++ +l+rg l+ ++Weev+ + + + +s+ qC++k+e+l++r++++k++ + ++y Vang08g04450.1 27 ETVHLIGAYQEKWYALKRGPLRHNQWEEVAVIVaarcgYDLAYpAKSALQCRHKMEKLRQRHRAEKKHVAAT--LRPAAWQY 106 899*************************9998666655566678******************998874..33334665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-12	27	111	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MRLSNRTSLR SNGRKVETEK PTGYDIETVH LIGAYQEKWY ALKRGPLRHN QWEEVAVIVA 60 ARCGYDLAYP AKSALQCRHK MEKLRQRHRA EKKHVAATLR PAAWQYNALM EDLECGPLPI 120 SALAPFQNDT DSDPDDDGTY RNGNNGDESF GYFRAKDCA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang08g04450.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027908576.1	3e-83	trihelix transcription factor ASIL1-like
TrEMBL	A0A0L9VT85	2e-80	A0A0L9VT85_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SW70	2e-80	A0A0S3SW70_PHAAN; Uncharacterized protein
TrEMBL	V7AKK1	1e-80	V7AKK1_PHAVU; Uncharacterized protein
STRING	XP_007134090.1	2e-81	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	3e-21	Trihelix family protein