PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g05160.1
Common NameLR48_Vigan11g168200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 253aa    MW: 27872.9 Da    PI: 8.2121
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g05160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1890144256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++ keq  +Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Vang08g05160.1  90 RKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLXPRQVEVWFQNRRARTK 144
                     66677889*********************************************98 PP
2HD-ZIP_I/II123.41.1e-3990179191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl keq+ +LEe+F+e+++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr+y++l+e+n+rL+kev+eLr +l
  Vang08g05160.1  90 RKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLXPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEDNRRLQKEVQELR-AL 179
                     69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.1E-15760IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466892.61E-1876147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-1883145IPR009057Homeodomain-like
PROSITE profilePS5007117.16786146IPR001356Homeobox domain
SMARTSM003892.7E-1588150IPR001356Homeobox domain
CDDcd000861.85E-1590147No hitNo description
PfamPF000466.4E-1690144IPR001356Homeobox domain
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
SMARTSM003402.3E-24146189IPR003106Leucine zipper, homeobox-associated
PfamPF021833.7E-12146180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLLCSASHVT NRSSEPPPFF FGIDVNLPPP PSVAPCYEEN GVSSPNSAVS SISGKRSERE  60
ENERGSCSRG GSEDDDGGGC GGDADGDTSR KKLRLLKEQA LVLEETFKEH NTLNPKQKQA  120
LAKQLNLXPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCYE NLTEDNRRLQ KEVQELRALK  180
FSPQLYXHMN PPTTLTMCPS CERVAVSSAS SSSAAMPSVP PSGNHNPLGP TIRRPVPVNP  240
WAAMSIQHRP PP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894SRKKLRL
2138146RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g05160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441546.11e-179PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-91HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0L9VUN61e-177A0A0L9VUN6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVD11e-177A0A0S3SVD1_PHAAN; Uncharacterized protein
STRINGXP_007134496.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.19e-71homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]