PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g06620.1
Common NameLR48_Vigan11g160800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 88aa    MW: 9894.63 Da    PI: 10.4471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g06620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13144755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    ++Er+RR++i + + eL ++lP +     kKl+K++i+ k+++Y+k+L+
  Vang08g06620.1  1 MAERKRREKISTMMIELSTMLPGL-----KKLDKISIVGKTIDYVKHLE 44
                    58**********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000105.5E-11144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-10147No hitNo description
SuperFamilySSF474592.88E-15156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.773143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MAERKRREKI STMMIELSTM LPGLKKLDKI SIVGKTIDYV KHLENRVNDL QEQKRKTESV  60
KCCKNKGSNV NISEKFPKVD ASVSGTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERKRRE
238RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g06620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150429e-96AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516222.12e-45transcription factor bHLH18-like
TrEMBLA0A0L9VUX03e-50A0A0L9VUX0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVH54e-51A0A0S3SVH5_PHAAN; Uncharacterized protein
STRINGXP_007134383.17e-37(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1824835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-16bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]