PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang08g06730.1
Common NameLR48_Vigan11g159900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 257aa    MW: 29610.9 Da    PI: 7.6886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang08g06730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-1186132455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L   +P +     kK +Ka iL++A+ Y+k+Lq
  Vang08g06730.1  86 DHIMAERKRRQELTERFIALSATIPGL-----KKTDKAYILREAMIYMKELQ 132
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.79582131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1486145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1487146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-887132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-887135No hitNo description
SMARTSM003535.5E-1088137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEDSWENWIS SLEMAEDNST DHSHINEDNF LTGIVLEPLD FSFLNSSTTT TMLSYDDNHD  60
NKNDHLSTPK AKQGAKKYRS SSEIQDHIMA ERKRRQELTE RFIALSATIP GLKKTDKAYI  120
LREAMIYMKE LQERVIELEK QNKRKRSTES RILIKKYSQR EEESKCDRSN LPLPHVEARV  180
LEKEVLIGIH CHKQKDIVLK IMALLQNHYL SLASSSVLPF GTSTLKVTII AQMDEQYCMT  240
VNNLVKSLRQ ALLKIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang08g06730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441317.11e-137PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0L9VU181e-135A0A0L9VU18_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVP41e-135A0A0S3SVP4_PHAAN; Uncharacterized protein
STRINGXP_007134377.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14989811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-45bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]