PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0959s00030.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 223aa    MW: 25773.7 Da    PI: 9.2781
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0959s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.5e-181097190
              FAR1  1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90
                      +fY+ +Ak+ GFs+r  +s+k+  ++ + i++r+f+C + g ++++++k       r+++r++C  kl ++k++   ++kw+vt +++ HnH+l 
  Vang0959s00030.1 10 NFYCLFAKTFGFSIRCGHSYKQnkNNIEDIYRREFTCHRAGVAKPKQRK-------RKSSRCNCSEKLLISKRTfgfKEKWMVTCFKNSHNHALL 97
                      6********************953334679**************98777.......99***************9999***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-161097IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
LFNSDTDAYN FYCLFAKTFG FSIRCGHSYK QNKNNIEDIY RREFTCHRAG VAKPKQRKRK  60
SSRCNCSEKL LISKRTFGFK EKWMVTCFKN SHNHALLDEK EVRFLPTYHD IPINGQARII  120
LLSKVGCSVS LIMRALEVEK GIEAGHLSFL DKDIRNFIQC QSSIGKKNDA SDVLKLCKGL  180
KDKDYAFQYD FTLVESNKLE HIIWVFGDSK RAYEFFWGCG CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0959s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506527.11e-126protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S3UKG51e-124A0A1S3UKG5_VIGRR; protein FAR1-RELATED SEQUENCE 11-like
STRINGAES987362e-87(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-53FAR1-related sequence 10