PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0969s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 358aa    MW: 40179.2 Da    PI: 6.9968
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0969s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.7e-192067148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+l+d++ ++  g+W+t +++ g++R++k+c++rw +yl
  Vang0969s00010.1 20 KGPWTPEEDEKLIDYISKHSHGSWRTLPKRAGLNRCGKSCRLRWTNYL 67
                      79********************************************97 PP
2Myb_DNA-binding52.79.8e-1773117147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg +T+e++  +++++  lG++ W++Ia++++ gRt++++k++w+++
  Vang0969s00010.1  73 RGQFTEEDERTIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNYWNTH 117
                       899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1751567IPR017930Myb domain
SuperFamilySSF466891.16E-3117114IPR009057Homeodomain-like
SMARTSM007177.0E-151969IPR001005SANT/Myb domain
PfamPF002491.3E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-242174IPR009057Homeodomain-like
CDDcd001672.41E-112267No hitNo description
PROSITE profilePS5129427.2468122IPR017930Myb domain
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PfamPF002492.3E-1573117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2675122IPR009057Homeodomain-like
CDDcd001676.09E-1276118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
LCLYIMGRSP CREEISGVKK GPWTPEEDEK LIDYISKHSH GSWRTLPKRA GLNRCGKSCR  60
LRWTNYLRPD IKRGQFTEED ERTIINLHSV LGNKWSKIAA HLPGRTDNEI KNYWNTHIRK  120
KLLKMGIDPE THKPRTDLNH LMSLSQLLGM SNLSSVMSST WGNNHLGLQP DITQLAKIQL  180
LQNLLQLMNS NSFVNMGNPY LFGNPNLNPL FLNGTNPLQT KEPVVLSGSE RFANPSVYSQ  240
AQSECSQQQD VSKSLADVEG GSIPQDLDYS KISPTNTNHS RENQEENPLP ALVAASPRMG  300
TLNPMGSGCG NLAQSSEESP SNTFFDDWEK LFDDERSGSY WKEILEFTST SASPIMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30151222108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0969s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427035.10.0PREDICTED: transcription factor MYB39 isoform X1
TrEMBLA0A0S3T3M10.0A0A0S3T3M1_PHAAN; Uncharacterized protein
STRINGXP_007158283.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-87myb domain protein 9