PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0974s00030.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 324aa    MW: 37003.9 Da    PI: 8.0704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0974s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-0764110246
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                       g WT+eE +l+ +a + + ++   +W  +a++++ g+t  +++  ++ 
  Vang0974s00030.1  64 GGWTAEENKLFENALAYYDKDtpdRWMMVAAMIP-GKTVGDVIQQYRE 110
                       56********************************.*******999986 PP
2Myb_DNA-binding461.2e-14172216347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Vang0974s00030.1 172 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 216
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.43861116IPR017884SANT domain
SMARTSM007173.4E-662114IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-1164119IPR009057Homeodomain-like
CDDcd001673.50E-566111No hitNo description
PROSITE profilePS5129420.244165221IPR017930Myb domain
SuperFamilySSF466892.28E-17166220IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-18168220IPR006447Myb domain, plants
SMARTSM007173.5E-13169219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-12169216IPR009057Homeodomain-like
PfamPF002494.4E-12172216IPR001005SANT/Myb domain
CDDcd001671.40E-10172217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLCPSLILFS FRTKSLWIWI PLSNISSYPV HSYLGEIMNR AIEVLSPASY LQNSNWLFQE  60
SQGGGWTAEE NKLFENALAY YDKDTPDRWM MVAAMIPGKT VGDVIQQYRE LEEDVSVIEA  120
GLIPVPGYTT SSFTLEWVNS QSYDEFKHFC TVGGKRGAST RPSEQERKKG VPWTEEEHRQ  180
FLLGLKKYGK GDWRNISRNF VTTRTPTQVA SHAQKYFIRQ LTGGKDKRRS SIHDITMVNL  240
QETKSPSSDT TRPSSPLQNQ KLSSMVKQEY DWKSPCDDMP FVFNSTNGNM FMAAPLHGIS  300
SYESRPQEHN ILRQSPWMPV FTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1663131876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0974s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419677.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor DIVARICATA
SwissprotQ8S9H71e-105DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0S3RU740.0A0A0S3RU74_PHAAN; Uncharacterized protein
STRINGXP_007140381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-115MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]