PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0976s00050.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17578.2 Da    PI: 10.6382
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0976s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.4e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif+ +gk++ey+s
  Vang0976s00050.1  9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYIS 59
                      79***********************************************86 PP
2K-box27.71.2e-1071108138
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl 38 
                       yq++sgk l++ak+e+l++e+++Lkke++++q e+R+ 
  Vang0976s00050.1  71 YQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRKQ 108
                       78999*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.26E-39280No hitNo description
SuperFamilySSF554551.16E-36296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGA SGKMHEYISP  60
STTLIDILDR YQRASGKTLW DAKHENLSNE IDRLKKENDS MQIELRKQVS SNLVFFVPQV  120
EVHRMFKRNV SATFGIRKRG KHAWTVDLTD NIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-19191183MEF2 CHIMERA
6bz1_B3e-19191183MEF2 CHIMERA
6bz1_C3e-19191183MEF2 CHIMERA
6bz1_D3e-19191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0976s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0899011e-136BT089901.1 Soybean clone JCVI-FLGm-3I15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022636007.16e-76floral homeotic protein PMADS 2-like isoform X3
RefseqXP_022636008.16e-76floral homeotic protein PMADS 2-like isoform X3
SwissprotQ0HA253e-63MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A0B2SH303e-74A0A0B2SH30_GLYSO; Floral homeotic protein PMADS 2
TrEMBLA0A3Q0EW891e-74A0A3Q0EW89_VIGRR; floral homeotic protein PMADS 2-like isoform X3
STRINGXP_007137476.17e-73(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]